Shola Olagoke, PhD | The Benioff Center for Microbiome Medicine

Phylogenetic diversity, functional pathways, and network interactions of ocular chlamydia-like organisms (CLOs) in trachoma-endemic Ethiopia.

mBio

Olagoke O, Zheng X, Chung S, Mengistie HD, Asfaha K, Read TD, Dean D

CtGAP 2.0: enhanced genome assembly, strain resolution, and phylogenomics for Chlamydia trachomatis.

Microbiology resource announcements

Olagoke O, Read TD, Dean D

Azithromycin alters the microbiome composition, function and resistome in women with Chlamydia trachomatis infections.

NPJ biofilms and microbiomes

Bommana S, Olagoke O, Hu YJ, Wang R, Kama M, Dehdashti M, Kodimerla R, Read TD, Dean D

Transcriptional profiling of Chlamydia trachomatis and its host in an ex vivo endocervical primary cell culture system using dual RNA sequencing.

Frontiers in cellular and infection microbiology

Olagoke O, Chittaranjan S, Dean D

Effect of Azithromycin treatment on the microbial composition, functional dynamics and resistomes of endocervical, vaginal and rectal microbiomes of women in Fiji with Chlamydia trachomatis infection.

bioRxiv : the preprint server for biology

Bommana S, Olagoke S, Hu Y, Wang R, Kama M, Dehdashti M, Kodimerla R, Read T, Dean D

Evaluating the feasibility, sensitivity, and specificity of next-generation molecular methods for pleural infection diagnosis.

Microbiology spectrum

Bell PT, Baird T, Goddard J, Olagoke OS, Burke A, Subedi S, Davey TR, Anderson J, Sarovich DS, Price EP

Whole-genome automated assembly pipeline for Chlamydia trachomatis strains from reference, in vitro and clinical samples using the integrated CtGAP pipeline.

NAR genomics and bioinformatics

Olagoke O, Aziz A, Zhu LH, Read TD, Dean D

Rapid fluoroquinolone resistance detection in Pseudomonas aeruginosa using mismatch amplification mutation assay-based real-time PCR.

Journal of medical microbiology

Madden DE, McCarthy KL, Bell SC, Olagoke O, Baird T, Neill J, Ramsay KA, Kidd TJ, Stewart AG, Subedi S, Choong K, Fraser TA, Sarovich DS, Price EP

Express Yourself: Quantitative Real-Time PCR Assays for Rapid Chromosomal Antimicrobial Resistance Detection in Pseudomonas aeruginosa.

Antimicrobial agents and chemotherapy

Madden DE, Olagoke O, Baird T, Neill J, Ramsay KA, Fraser TA, Bell SC, Sarovich DS, Price EP

Genomic diversity and antimicrobial resistance of Prevotella species isolated from chronic lung disease airways.

Microbial genomics

Webb KA, Olagoke O, Baird T, Neill J, Pham A, Wells TJ, Ramsay KA, Bell SC, Sarovich DS, Price EP

Koala Retrovirus in Northern Australia Shows a Mixture of Stable Endogenization and Exogenous Lineage Diversification within Fragmented Koala Populations.

Journal of virology

Quigley BL, Melzer A, Ellis W, Tzipori G, Nilsson K, Olagoke O, Robbins A, Hanger J, Timms P

Koalas vaccinated against Koala retrovirus respond by producing increased levels of interferon-gamma.

Virology journal

Olagoke O, Quigley BL, Timms P

Therapeutic vaccination of koalas harbouring endogenous koala retrovirus (KoRV) improves antibody responses and reduces circulating viral load.

NPJ vaccines

Olagoke O, Quigley BL, Hemmatzadeh F, Tzipori G, Timms P

Vaccination of koalas during antibiotic treatment for Chlamydia-induced cystitis induces an improved antibody response to Chlamydia pecorum.

Scientific reports

Phillips S, Quigley BL, Olagoke O, Booth R, Pyne M, Timms P

Changes in Endogenous and Exogenous Koala Retrovirus Subtype Expression over Time Reflect Koala Health Outcomes.

Journal of virology

Quigley BL, Phillips S, Olagoke O, Robbins A, Hanger J, Timms P

Prevalence and clinical significance of koala retrovirus in two South Australian koala (Phascolarctos cinereus) populations.

Journal of medical microbiology

Fabijan J, Miller D, Olagoke O, Woolford L, Boardman W, Timms P, Polkinghorne A, Simmons G, Hemmatzadeh F, Trott DJ, Speight KN

Publications